80 constexpr aa20() noexcept = default;
81 constexpr
aa20(
aa20 const &) noexcept = default;
83 constexpr
aa20 & operator=(
aa20 const &) noexcept = default;
84 constexpr
aa20 & operator=(
aa20 &&) noexcept = default;
85 ~
aa20() noexcept = default;
92 static constexpr
char_type rank_to_char_table[
alphabet_size]{
'A',
'C',
'D',
'E',
'F',
'G',
'H',
'I',
'K',
'L',
93 'M',
'N',
'P',
'Q',
'R',
'S',
'T',
'V',
'W',
'Y'};
158inline namespace literals
174constexpr aa20 operator""_aa20(
char const c)
noexcept
195 for (
size_t i = 0; i < n; ++i)
196 r[i].assign_char(s[i]);
Provides seqan3::aminoacid_alphabet.
Provides seqan3::aminoacid_base.
The canonical amino acid alphabet..
Definition: aa20.hpp:64
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition: aa20.hpp:92
constexpr aa20() noexcept=default
Defaulted.
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition: aa20.hpp:96
friend base_t
Befriend seqan3::aminoacid_base.
Definition: aa20.hpp:70
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition: aa20.hpp:102
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition: aa20.hpp:111
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition: alphabet_base.hpp:261
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids.
Definition: aminoacid_base.hpp:32
alphabet_base< aa20, size, char > base_t
Type of the base class.
Definition: aminoacid_base.hpp:35
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83